Tapio Salakoski

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods (2020)

Journal of the American Medical Informatics Association

Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Filip Ginter, Tapio Salakoski, Sanna Salanterä

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module (2020)

Frontiers in Education Conference, Frontiers in Education Conference

Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019)

Genome Biology

Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Template-free Data-to-Text Generation of Finnish Sports News (2019)

Nordic Conference on Computational Linguistics, Linköping Electronic Conference Proceedings

Jenna Kanerva, Samuel Rönnqvist, Riina Kekki, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Pain process of patients with cardiac surgery — Semantic annotation of electronic patient record data (2019)

Journal of Clinical Nursing

Heikkilä Kristiina, Axelin Anna, Peltonen Laura-Maria, Heimonen Juho, Anttila Pauliina, Viljanen Timo, Salakoski Tapio, Salanterä Sanna

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Secondary use of electronic health records: Availability aspects in two Nordic countries (2019)

Health Information Management Journal

Vikström A., Moen H., Moosavi SR, Salakoski T., Salanterä S.

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora (2019)

Nordic Conference on Computational Linguistics, Linköping Electronic Conference Proceedings

Hans Moen, Laura-Maria Peltonen, Henry Suhonen, Hanna-Maria Matinolli, Riitta Mieronkoski, Kirsi Telen, Kirsi Terho, Tapio Salakoski, Sanna Salanterä

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Is Multilingual BERT Fluent in Language Generation? (2019)

NLPL Workshop on Deep Learning for Natural Language Processing, Linköping Electronic Conference Proceedings

Samuel Rönnqvist, Jenna Kanerva, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Unsupervised phrase-level query rewriting for assisting search in clinical free text (2019)

World Congress on Medical and Health Informatics, World congress on medical and health informatics

Moen H., Peltonen L., Suhonen H., Koivumäki M., Salakoski T., Salanterä S.

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling (2018)

Database: The Journal of Biological Databases and Curation

Suwisa Kaewphan, Kai Hakala, Niko Miekka, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

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Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods (2020)

Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module (2020)

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019)

Template-free Data-to-Text Generation of Finnish Sports News (2019)

Pain process of patients with cardiac surgery — Semantic annotation of electronic patient record data (2019)

Secondary use of electronic health records: Availability aspects in two Nordic countries (2019)

An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora (2019)

Is Multilingual BERT Fluent in Language Generation? (2019)

Unsupervised phrase-level query rewriting for assisting search in clinical free text (2019)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling (2018)