Martti Tolvanen

Mycobacterial β-carbonic anhydrases : Molecular biology, role in the pathogenesis of tuberculosis and inhibition studies (2024)

Enzymes

Parkkinen, Jenny; Bhowmik, Ratul; Tolvanen, Martti; Carta, Fabrizio; Supuran, Claudiu T.; Parkkila, Seppo; Aspatwar, Ashok

(A3 Vertaisarvioitu kirjan tai muun kokoomateoksen osa)

Cloning, characterization, and inhibition of the novel beta-carbonic anhydrase from parasitic blood fluke, Schistosoma mansoni (2023)

Journal of Enzyme Inhibition and Medicinal Chemistry

Haapanen Susanna, Angeli Andrea, Tolvanen Martti, Emameh Reza Zolfaghari, Supuran Claudiu T, Parkkila Seppo

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Cloning, purification, kinetic and anion inhibition studies of a recombinant β-carbonic anhydrase from the Atlantic salmon parasite platyhelminth Gyrodactylus salaris (2022)

Journal of Enzyme Inhibition and Medicinal Chemistry

Aspatwar Ashok, Barker Harlan, Aisala Heidi, Zueva Ksenia, Kuuslahti Marianne, Tolvanen Martti, Primmer Craig R, Lumme Jaakko, Bonardi Alessandro, Tripathi Amit, Parkkila Seppo, Supuran Claudiu T

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Biochemical and Biophysical Characterization of Carbonic Anhydrase VI from Human Milk and Saliva (2022)

Protein Journal

Yrjänäinen Alma, Patrikainen Maarit S., Azizi Latifeh, Tolvanen Martti E. E., Laitaoja Mikko, Jänis Janne, Hytönen Vesa P., Nocentini Alessio, Supuran Claudiu T., Parkkila Seppo

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

Carbonic anhydrases in metazoan model organisms: molecules, mechanisms, and physiology (2022)

Physiological Reviews

Aspatwar Ashok, Tolvanen Martti E.E., Barker Harlan, Syrjänen Leo, Valanne Susanna, Purmonen Sami, Waheed Abdul, Sly William S., Parkkila Seppo

(Vertaisarvioitu katsausartikkeli tieteellisessä aikakauslehdessä (A2))

Neural Network and Random Forest Models in Protein Function Prediction (2020)

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Hakala Kai, Kaewphan Suwisa, Björne Jari, Mehryary Farrokh, Moen Hans, Tolvanen Martti, Salakoski Tapio, Ginter Filip

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Engineered Carbonic Anhydrase VI-Mimic Enzyme Switched the Structure and Affinities of Inhibitors (2019)

Scientific Reports

Justina Kazokaitė, Visvaldas Kairys, Joana Smirnovienė, Alexey Smirnov, Elena Manakova, Martti Tolvanen, Seppo Parkkila, Daumantas Matulis

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Carbonic anhydrases from pathogens: Protozoan CAs and related inhibitors as potential antiprotozoal agents (2019)

Ashok Aspatwar, Harlan Barker, Martti Tolvanen, Reza Zolfaghari Emameh, Seppo Parkkila

(Vertaisarvioitu artikkeli kokoomateoksessa (A3))

Catalytically inactive carbonic anhydrase-related proteins enhance transport of lactate by MCT1 (2019)

FEBS Open Bio

Aspatwar A., Tolvanen M.E.E., Schneider H-P., Becker H.M., Narkilahti S., Parkkila S., Deitmer J.W.

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019)

Genome Biology

Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg

(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )

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Mycobacterial β-carbonic anhydrases : Molecular biology, role in the pathogenesis of tuberculosis and inhibition studies (2024)

Cloning, characterization, and inhibition of the novel beta-carbonic anhydrase from parasitic blood fluke, Schistosoma mansoni (2023)

Cloning, purification, kinetic and anion inhibition studies of a recombinant β-carbonic anhydrase from the Atlantic salmon parasite platyhelminth Gyrodactylus salaris (2022)

Biochemical and Biophysical Characterization of Carbonic Anhydrase VI from Human Milk and Saliva (2022)

Carbonic anhydrases in metazoan model organisms: molecules, mechanisms, and physiology (2022)

Neural Network and Random Forest Models in Protein Function Prediction (2020)

Engineered Carbonic Anhydrase VI-Mimic Enzyme Switched the Structure and Affinities of Inhibitors (2019)

Carbonic anhydrases from pathogens: Protozoan CAs and related inhibitors as potential antiprotozoal agents (2019)

Catalytically inactive carbonic anhydrase-related proteins enhance transport of lactate by MCT1 (2019)

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019)