Farrokh Mehryary

TurkuNLP Entry for Interactive Bio-ID Assignment (2018)

BioCreative

Suwisa Kaewphan, Farrokh Mehryary, Kai Hakala, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction (2018)

Database: The Journal of Biological Databases and Curation

Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Combining support vector machines and LSTM networks for chemical-protein relation extraction (2018)

BioCreative

Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

End-to-End System for Bacteria Habitat Extraction (2017)

Workshop on Biomedical Natural Language Processing

Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)

Social Media Mining for Health Research and Applications, CEUR Workshop Proceedings

Kai Hakala, Farrokh Mehryary, Hans Moen, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Detecting mentions of pain and acute confusion in Finnish clinical text (2017)

Workshop on Biomedical Natural Language Processing

Hans Moen, Kai Hakala, Farrokh Mehryary, Laura-Maria Peltonen, Tapio Salakoski, Filip Ginter, Sanna Salanterä

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)

Genome Biology

Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P

(Vertaisarvioitu alkuperäisartikkeli tai data-artikkeli tieteellisessä aikakauslehdessä (A1))

Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016)

BioNLP Shared Task

Farrokh Mehryary, Jari Bjorne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)

Journal of Biomedical Semantics

Mehryary F, Kaewphan S, Hakala K, Ginter F

(Kirjoitus tai data-artikkeli tieteellisessä aikakauslehdessä (B1))

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014)

International symposium on semantic mining in biomedicine

Farrokh Mehryary, Suwisa Kaewphan, Kai Hakala, Filip Ginter

(Vertaisarvioitu artikkeli konferenssijulkaisussa (A4))

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TurkuNLP Entry for Interactive Bio-ID Assignment (2018)

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction (2018)

Combining support vector machines and LSTM networks for chemical-protein relation extraction (2018)

End-to-End System for Bacteria Habitat Extraction (2017)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter (2017)

Detecting mentions of pain and acute confusion in Finnish clinical text (2017)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)

Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification (2016)

Eliminating Incorrect Events from Large‐Scale Event Networks by Trigger Word Clustering and Pruning (2014)